napistu

Modules

consensus

Creating a consensus model by merging shared entities across pathway models.

constants

Module to contain all constants for CPR

context

gcs

genomics

Napistu genomics module.

identifiers

Systematic identifiers for species, reactions, compartments, etc.

indices

Pathway Index for organizing metadata and paths of pathway representations.

ingestion

matching

mcp

modify

network

ontologies

rpy2

napistu.rpy2

sbml_dfs_core

The core SBML DataFrame class for representing a SBML model as a collection of pandas DataFrames.

sbml_dfs_utils

Utilities supporting creation and manipulation of SBML_dfs instances.

source

The Source class for tracking the model(s) an entity (i.e., a compartment, species, reaction) came from.

statistics

utils

Napistu utilities package.