napistu.network

Modules

clustering

Functions for clustering an igraph.Graph's vertices.

constants

Module to contain all constants used for representing and working with networks

data_handling

edgelist

Edgelist class for representing and validating graph edges.

ig_utils

General utilities for working with igraph.Graph objects.

neighborhoods

Approaches to define the molecular neighborhoods around a compartmentalized species.

net_create

net_create_utils

net_propagation

Network propagation with null distribution testing.

ng_core

Core graph class for molecular network analysis.

ng_utils

Utilities specific to NapistuGraph objects and the wider Napistu ecosystem.

paths

precompute