napistu.ingestion

Modules

bigg

constants

gtex

harmonizome

Ingestion utilities for Harmonizome datasets like Achilles and the Replogle et al. Perturb-seq datasets, Cell 2022.

hpa

identifiers_etl

intact

napistu_edgelist

Module with helper functions to deal with edgelists

obo

Functions for ingesting OBO files

omnipath

organismal_species

This module contains the OrganismalSpeciesValidator class, which is used to validate and convert between common and Latin species names.

perturbseq

Ingestion and formatting utilities for Perturb-seq datasets.

psi_mi

reactome

reactome_fi

sbml

string

trrust